Application of C++ in Cancer Modeling • The speaker (Ruibo) • University of Washington, department of applied mathematics • Cancer Modeling Group: Evolution of cancer initiation • Group leader:

Computing Resource CPU GPU PCI Bus (or other fabric) NIC - Historically, network comm. was CPU-centric 1) Direct GPU access to Infiniband allows GPU-to-GPU network transfers 2) Fast in-node fabrics Resource CPU GPU PCI Bus (or other fabric) NIC Data - Historically, network comm. was CPU-centric 1) Direct GPU access to Infiniband allows GPU-to-GPU network transfers 2) Fast in-node fabrics Resource CPU GPU PCI Bus (or other fabric) NIC Data - Historically, network comm. was CPU-centric 1) Direct GPU access to Infiniband allows GPU-to-GPU network transfers 2) Fast in-node fabrics

notesABOUT ME • Programming in C++ since 1999 (Professionally since 2005) • Worked in Embedded and Application Development • Since 2013 in AAA Game Development • Representing myself • Examples in this talk compress • Developer iteration time 7Key differences between game and data building Game Code Frame centric Minimise frame time - fast frame rate Eliminate frame time spikes - remove jitter Lag & jitter break the job system to synchronise instead 35Next optimisation technique Avoid blocking with thread-centric sync in jobs Mutex, SpinLock, blocking IO Worst thing to wait on lock Prevents other jobs from running

Independent Code”, relocation tables for dynamically linked libraries, … • It is about the application of Data Orientation techniques with an emphasis of being able to move the data. • Why would data where it leads to the best performanceData Orientation • In 2021 I explained, in a very C++ centric way, about Data Orientation techniques, the benefits to be obtained and how to apply them. •

the client application. 3 Conan Documentation, Release 1.41.0 The different applications in the image above are: • The Conan client: this is a console/terminal command-line application, containing contributors have also created the following extended cheatsheet providing a more narrative and workflow- centric cheatsheet. It is effectively, a single-page summary of other docs pages which community users found Configurations – Profiles – Remote repositories • Consuming packages – Using packages in an application – Downloading packages – The local cache – Using packages as standalone applications • Searching

the client application. 3 Conan Documentation, Release 1.42.2 The different applications in the image above are: • The Conan client: this is a console/terminal command-line application, containing contributors have also created the following extended cheatsheet providing a more narrative and workflow- centric cheatsheet. It is effectively, a single-page summary of other docs pages which community users found Configurations – Profiles – Remote repositories • Consuming packages – Using packages in an application – Downloading packages – The local cache – Using packages as standalone applications • Searching

the client application. 3 Conan Documentation, Release 1.40.4 The different applications in the image above are: • The Conan client: this is a console/terminal command-line application, containing contributors have also created the following extended cheatsheet providing a more narrative and workflow- centric cheatsheet. It is effectively, a single-page summary of other docs pages which community users found Configurations – Profiles – Remote repositories • Consuming packages – Using packages in an application – Downloading packages – The local cache – Using packages as standalone applications • Searching

the client application. 3 Conan Documentation, Release 1.39.0 The different applications in the image above are: • The Conan client: this is a console/terminal command-line application, containing contributors have also created the following extended cheatsheet providing a more narrative and workflow- centric cheatsheet. It is effectively, a single-page summary of other docs pages which community users found Configurations – Profiles – Remote repositories • Consuming packages – Using packages in an application – Downloading packages – The local cache – Using packages as standalone applications • Searching

the client application. 3 Conan Documentation, Release 1.37.2 The different applications in the image above are: • The Conan client: this is a console/terminal command-line application, containing contributors have also created the following extended cheatsheet providing a more narrative and workflow- centric cheatsheet. It is effectively, a single-page summary of other docs pages which community users found Configurations – Profiles – Remote repositories • Consuming packages – Using packages in an application – Downloading packages – The local cache – Using packages as standalone applications • Searching

the client application. 3 Conan Documentation, Release 1.38.0 The different applications in the image above are: • The Conan client: this is a console/terminal command-line application, containing contributors have also created the following extended cheatsheet providing a more narrative and workflow- centric cheatsheet. It is effectively, a single-page summary of other docs pages which community users found Configurations – Profiles – Remote repositories • Consuming packages – Using packages in an application – Downloading packages – The local cache – Using packages as standalone applications • Searching